Publications › Vazquez


Pathways of DNA unlinking: A story of stepwise simplification.
Stolz R, Yoshida M, Brasher R, Flanner M, Ishihara K, Sherratt DJ, Shimokawa K, Vazquez M.
Sci Rep. 2017 Sep 29;7(1):12420. doi: 10.1038/s41598-017-12172-2
PMID: 28963549

Reproducibility of 3D chromatin configuration reconstructions.
Segal MR, Xiong H, Capurso D, Vazquez M, Arsuaga J.
Biostatistics. 2014 Jul;15(3):442-56. doi: 10.1093/biostatistics/kxu003. Epub 2014 Feb 11
PMID: 24519450; PMCID: PMC4059464

FtsK-dependent XerCD-dif recombination unlinks replication catenanes in a stepwise manner.
Shimokawa K, Ishihara K, Grainge I, Sherratt DJ, Vazquez M.
Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):20906-11. doi: 10.1073/pnas.1308450110. Epub 2013 Nov 11
PMID: 24218579; PMCID: PMC3876235

Determining the topology of stable protein-DNA complexes.
Darcy IK, Vazquez M.
Biochem Soc Trans. 2013 Apr;41(2):601-5. doi: 10.1042/BST20130004. Review
PMID: 23514161

New biologically motivated knot table.
Brasher R, Scharein RG, Vazquez M.
Biochem Soc Trans. 2013 Apr;41(2):606-11. doi: 10.1042/BST20120278. Review
PMID: 23514162

Bounds for the minimum step number of knots confined to slabs in the simple cubic lattice.
Ishihara K, Scharein R, Diao Y, Arsuaga J, Vazquez M.
J. of Phys. A: Math Theory. 2012. 45:065003. doi:10.1088/1751-8113/45/6/065003

The effects of density on the topological structure of the mitochondrial DNA from trypanosomes.
Arsuaga J, Diao, Y, Kaplan T, Vazquez M.
Journal of Mathematical Biology. 2012 May:64(6):1087-1108. doi: 10.1007/s00285-011-0438-0

Signed Unknotting Number and Knot Chirality Discrimination via Strand Passage.
Soteros C, Ishihara K, Shimokawa K, Szafron M, and Vazquez M.
Progress of Theoretical Physics Supplement. 2011 Oct 3;191:78-95. doi: 10.1143/PTPS.191.78

Applications of Computational Homology to Prediction of Treatment Response in Breast Cancer Patients.
DeWoskin D, Climent J, Cruz-White I, Vazquez M, Park C, Arsuaga M.
Topology and its Applications. 2010 Jan; 157(1):157-164. doi: 10.1016/j.topol.2009.04.036

Tangle analysis of difference topology experiments: applications to a Mu protein-DNA complex.
Darcy I, Luecke J, Vazquez M.
Algebraic and Geometric Topology. 2009 Oct; 9:2247-2309. doi: 10.2140/agt.2009.9.2247

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