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Publications

by Faculty:  Barlow, Collins, Dawson, Heyer, Hunter, Igo, Kowalczykowski, Lin, Navarro, Nelson, Parales, Privalsky, Ralston, Roth, Singer, Stewart, Vazquez, Xu

PHF11 promotes DSB resection, ATR signaling, and HR.
Gong Y, Handa N, Kowalczykowski SC, de Lange T.
Genes Dev. 2017 Jan 1;31(1):46-58. doi: 10.1101/gad.291807.116
PMID: 28115467

A SUMO-ubiquitin relay recruits proteasomes to chromosome axes to regulate meiotic recombination.
Rao HB, Qiao H, Bhatt SK, Bailey LR, Tran HD, Bourne SL, Qiu W, Deshpande A, Sharma AN, Beebout CJ, Pezza RJ, Hunter N.
Science. 2017 Jan 5. pii: aaf6407. doi: 10.1126/science.aaf6407. [Epub ahead of print]

Corepressor diversification by alternative mRNA splicing is species specific.
Privalsky ML, Snyder CA, Goodson ML.
BMC Evol Biol. 2016 Oct 19;16(1):221
PMID: 27756201; PMCID: PMC5069798

Strand displacement synthesis by yeast DNA polymerase ε.
Ganai RA, Zhang XP, Heyer WD, Johansson E.
Nucleic Acids Res. 2016 Sep 30;44(17):8229-40. doi: 10.1093/nar/gkw556
PMID: 27325747; PMCID: PMC5041465

Tolerance to oxidative stress is required for maximal xylem colonization by the xylem-limited bacterial phytopathogen, Xylella fastidiosa.
Wang P, Lee Y, Igo MM, Roper MC.
Mol Plant Pathol. 2016 Jul 5. doi: 10.1111/mpp.12456. [Epub ahead of print]
PMID: 27377476

Eight unique basal bodies in the multi-flagellated diplomonad Giardia lamblia.
McInally SG, Dawson SC.
Cilia. 2016 Jul 4;5:21. doi: 10.1186/s13630-016-0042-4. Review
PMID: 27379179; PMCID: PMC4931700

Reinterpreting Long-Term Evolution Experiments: Is Delayed Adaptation an Example of Historical Contingency or a Consequence of Intermittent Selection?
Roth JR, Maisnier-Patin S.
J Bacteriol. 2016 Feb 16;198(7):1009-12. doi:10.1128/JB.00110-16
PMID: 26883821; PMCID: PMC4800865.

Waves of actin and microtubule polymerization drive microtubule-based transport and neurite growth before single axon formation.
Winans AM, Collins SR, Meyer T.
Elife. 2016 Feb 2;5. pii: e12387. doi: 10.7554/eLife.12387. [Epub ahead of print]
PMID: 26836307

Elevated levels of TRF2 induce telomeric ultrafine anaphase bridges and rapid telomere deletions.
Nera B, Huang HS, Lai T, Xu L.
Nat Commun. 2015 Dec 7;6:10132. doi: 10.1038/ncomms10132
PMID: 26640040

Single-molecule visualization of RecQ helicase reveals DNA melting, nucleation, and assembly are required for processive DNA unwinding.
Rad B, Forget AL, Baskin RJ, Kowalczykowski SC.
Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):E6852-61. doi: 10.1073/pnas.1518028112. Epub 2015 Nov 4
PMID: 26540728; PMCID: PMC4687592

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment.
Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan W, Robeson MS, Lu T-Y, Jawdy S, Brown SD., Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, Pelletier DA.
Frontiers in Microbiology. 2015. 6:1118. doi:10.3389/fmicb.2015.01118

Nullified by a Receiver Domain Missense Substitution.
Huynh TN, Lin HY, Noriega CE, Lin AV, Stewart V.
J Bacteriol. 2015 Oct 15;197(20):3294-306. doi: 10.1128/JB.00436-15. Epub 2015 Aug 10
PubMed PMID: 26260457

Chew on this: amoebic trogocytosis and host cell killing by Entamoeba histolytica.
Ralston KS.
Trends Parasitol. 2015 Jun 9. pii: S1471-4922(15)00100-2. doi: 10.1016/j.pt.2015.05.003. [Epub ahead of print] Review
PMID: 26070402

Reduced Ssy1-Ptr3-Ssy5 (SPS) Signaling Extends Replicative Life Span by Enhancing NAD+ Homeostasis in Saccharomyces cerevisiae.
Tsang F, James C, Kato M, Myers V, Ilyas I, Tsang M, Lin SJ.
J Biol Chem. 2015 Mar 30. doi: 10.1074/jbc.M115.644534. [Epub ahead of print]
PMID: 25825491

Increased Rrm2 gene dosage reduces fragile site breakage and prolongs survival of ATR mutant mice.
Lopez-Contreras AJ, Specks J, Barlow JH, Ambrogio C, Desler C, Vikingsson S, Rodrigo-Perez S, Green H, Rasmussen LJ, Murga M, Nussenzweig A, Fernandez-Capetillo O.
Genes Dev. 2015 Apr 1;29(7):690-5. doi: 10.1101/gad.256958.114
PMID: 25838540

TOPping Off Meiosis (A Minireview highlighting the two publications by the Hunter and Kowalczykowski/Heyer laboratories).
Haber JE.
Mol Cell. 2015 Feb 19; 57(4):577-581. doi: 10.1016/j.molcel.2015.02.004
PMID: 25699706

Regulation of Yersinia protein kinase A (YpkA) Kinase Activity by Multisite Autophosphorylation and Identification of an Amino-terminal Substrate-binding Domain in YpkA.
Pha K, Wright ME, Barr TM, Eigenheer RA, Navarro L.
J Biol Chem. 2014 Aug 1. pii: jbc.M114.601153. [Epub ahead of print]
PMID: 25086045

Reproducibility of 3D chromatin configuration reconstructions.
Segal MR, Xiong H, Capurso D, Vazquez M, Arsuaga J.
Biostatistics. 2014 Jul;15(3):442-56. doi: 10.1093/biostatistics/kxu003. Epub 2014 Feb 11
PMID: 24519450; PMCID: PMC4059464

Growth of Myxococcus xanthus in continuous flow cell bioreactors as a method for studying development.
Smaldone GT, Jin Y, Whitfield DL, Mu AY, Wong EC, Wuertz S, Singer M.
Appl Environ Microbiol. 2014 Apr;80(8):2461-7. doi:10.1128/AEM.03369-13. Epub 2014 Feb 7.
PubMed PMID: 24509931

Bio-geo-chemical processes for improvement of soil engineering properties with focus on microbially induced calcite precipitation.
DeJong JD, Martinez BC, Ginn TR, Nelson DC.
in Coupled Phenomena in Environmental Geotechnics, Manassero et al. Eds., CRC Press, 2013.


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